PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3254 (1113 amino acids)

SeqID: PfGW456L13_3254 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            6.58
    OuterMembrane          2.25
    Periplasmic            1.02
    Extracellular          0.09
    CytoplasmicMembrane    0.06
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3254
MAKKPKAATFIKDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIAKLDYIADLGVNTIW
LLPFYPSPRRDDGYDIAEYRGVHSDYGTMADARRFIAEAHKRGLRVITELVINHTSDQHP
WFQRARKAKPGSAARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVMKAVLSVMRYWLDMGIDGLRLDAIPYLIERDGTNNENLPETHDVLKKIRA
EIDANYPDRMLLAEANQWPEDTQLYFGDTDKKGLNGDECHMAFHFPLMPRMYMALAQEDR
FPITDILRQTPDIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADRRARINLGIRR
RLAPLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRN
GGFSRADPASLVLPPIMDPQYGYLSVNVETQAGDPHSLLNWTRRMLAVRKHSKAFGRGTL
KMLSPSNRRILAYTREYTGVDGKHEIILCVANVSRSAQAAELDLSAYVGMVPVEMLGGNA
FPPIGQLNFLLTLAPYGFYWFGLAAENQMPSWHVEPAQSLPDFTTLVLKKRMEELLEAPS
RTTLEQSILPNWLQNRRWFAGKDAAIEQVELAYGVRFGDPQHPVLFSEINVTSGGQSSRY
QLPFGFISEDQVGTPLPQQLALSRVRRGRQVGLITDAFSLDTFVHAVLQGIQAGTVLASS
DGDIRFESTAELEKLGLNAESPVRYLSAEQSNSSVVIGNSLVLKLIRKVACGVHPELEMS
AYLTQAGFSNISPLLGAVVRRDGAGEDNLLMIAQGYLSNQGDAWEWTQNNLERALRDELA
DAVSEQEQHYNALGELKDFAAMLGQRLGEMHQVLAAPSANPDFLPQVTTQKEALASAKDV
AAQIERALNLLKQHKHQLDPADQTLVGRLLDNKKAILGHVQALGKKIAGGLRIRVHGDLH
LGQVLVIKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMAINVQSVDNT
AAADAARLRVTDRYLSEARQAFVDAYRLAAASLAHAWQDPEGEDAALALFGLEKAAYEVA
YEAENRPAWLPVPLHGLYGLLSGLKPFSDLGGE