PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3336 (751 amino acids)

SeqID: PfGW456L13_3336 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3336
MYKDLKFPVLIVHRDIKADSVAGDRVRGIARELEQEGFSVVSAVDYTEGRLVASTYHGLS
CMLIASEDASTHSHLLQNMAELIGLARVRAPDLPIFALGEKVTLENAPADAMAELNQLRG
ILYLFEDTVPFLARQVARAARKYLDGLLPPFFKALVQHTADSNYSWHTPGHGGGVAYHKS
PVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS
TANKIVWHSVVARDDLVLVDRNCHKSVLHSIIMTGAIPLYLCPERNELGIIGPIPLSEFS
RESIQAKIDASPLTKGRSPKVKLAVVTNSTYDGLCYNAELIRQQLGNSVEVLHFDEAWYA
YAAFHEFFAGRYGMGTSRDEDSPLVFTTHSTHKLLAAFSQASMIHVRDGGARQLDRDRFN
EAFMMHISTSPQYGIIASLDVASAMMEGPAGRSLLQEMFDEALSFRRALANLRQHIAADD
WWFSIWQPPSAEGIERVVTEDWLLQPDADWHGFGGVTDDYVLLDPIKVTLVMPGLTAGGA
LSERGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDAN
VSLASCLPCVAQENVARYQGMGLRDLCDQLHACYRSNATARHLKRMYTVLPEVAMKPADA
YDQLVRGEVEAVSIDALDGRIAAVMLVPYPPGIPLIMPGERFTESTRSIIDYLAFARAFD
SSFPGFVADVHGLQHEDQGSGRCYTVDCIKE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory