PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3344 (357 amino acids)

SeqID: PfGW456L13_3344 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027932: Inner membrane ABC transporter permease protein yejB]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3344
MLAYIFRRLLLIIPTLFGILLINFVIIQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVS
VAGSAYRGAQGLDPALIKEIEHMYGFDKSAPERLWIMVKNYASLDFGDSFFRDAKVIDLI
KEKMPVSISLGLWSTLIMYLVSIPLGIAKAKRHGSHFDVWTSSAIIVGYAIPAFLFAILL
IVVFAGGSYLDWFPLRGLTSNNFDELSMGGKILDYFWHLALPVTALVIGNFATMTLLTKN
SFLDEINKQYVITARAKGLTNHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLVEVIF
SLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRIDFESREH