PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3346 (536 amino acids)

SeqID: PfGW456L13_3346 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3346
MNQHNLIEVRDLSVNFVVGNRCQRAVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLL
PYPLARHPSGTILYSGQNLLELKEKTIRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVL
GIHKGLTGKVATKRTLELLEMVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLI
ADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQQGCIVEQA
SCEELFRAPQHPYTRELLAAEPGGKPASNVIGPPLLAVEDLKVWFPIKKGLLKRTVDYVK
AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIASKGAIRFEGQQLDCLTQQQVRPL
RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKMGTEAEQEQAIIAALKEVGLDPETRHR
YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLF
ISHDLAVVKALSHQLMVVKHGQVVEQGDAQSIFAAPQHPYTQQLLEAAFLAPATAQ