PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3378 (866 amino acids)

SeqID: PfGW456L13_3378 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3378
VLEAYRKHIEERAALGIVPQPLNAEQTAGLVELLKNPPAGEEAFLVDLITNRVPPGVDEA
AYVKAGFLSAIAKGEAKSPLIDKKRAVELLGTMQGGYNIVTLVNLLDDAELAPVAAEELK
HTLLMFDAFHDVAEKAKNGNVHAQGVLQSWADGEWFVKRPTLADKISLRVFKVTGETNTD
DLSPAPDAWSRPDIPLHALAMLKMARDGIVPDAQGVTGPMKQIEEMRNAGFPIAYVGDVV
GTGSSRKSATNSVLWFFGDDVPYVPNKRAGGFCFGSKIAPIFYNTMEDAGALPIEFDVSN
MHMGDVIDLYPHAGKVCKHGTDEVLTTFEMKTPVLLDEVRAGGRIPLIIGRGLTEKARTE
LGLPPSTLFKKPEAPAESTKGFTLAQKMVGKACGVTGVRPGTYCEPKMTTVGSQDTTGPM
TRDELKDLACLGFSTDLVMQSFCHTAAYPKPIDVTTHHTLPDFIMTRGGVSLRPGDGIIH
SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESILVRFKGEL
QPGVTLRDLVHAIPYYAIQAGLLTVEKKGKKNAFSGRILEIEGLPKLTVEQAFELSDASA
ERSAAGCTIQLSKESIAEYLQSNITLLRWMIGEGYGDARTLERRAQAMEAWLANPELLEA
DKDAEYAEVIEIDLADIKEPVLCAPNDPDDARLLSSVAGEKIDEVFIGSCMTNIGHFRAA
GKLLEQVKGQLPTRLWLSPPTKMDAHQLTEEGYYGIYGKAGARMEMPGCSLCMGNQARVE
PNSTVVSTSTRNFPNRLGDGANVYLASAELASVASILGRLPTVEEYMEYAGKIDSMAADV
YRYLSFDQIAEFREAAANANIPVVQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory