PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3478 (510 amino acids)

SeqID: PfGW456L13_3478 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3478
MTSREISPVIRLDPADNVVVARVEIPTGTAITNESLTTLQDVPLGHKIAARMIEKGQPVL
KYNTVIGYASEDLPPGTWMHSHNIEFGETARDYRYGLDYVPTDLLPADKRATFQGIIRED
GRVATRNYLGIFVVGNCGATVARKIANHFDEERLAAFPNIDGVVPFVHEIGCGMEMTGEP
MNLLRRTIGGHIKHANTAGGLLIALGCERNNIYGFIEQEQLVLGDMLKSLVIQDVGGVKT
AVDQGIKMIQAMLPQANAVQRETVSAEHLIIGMQCGGSDGFSGLSANPALGAAVDILVRH
GGTAILSETSEIFGVEHTLTARAATPEVGRKLIDRIDWWLEYNKGRDTQINGRVSPGNNA
GGLANVLEKSLGGAKKGGNAPLMDVYEYAYPVTTHGLVFMDTPGYDPVSATGQIAGGANM
IAFTTGRGSCFGSVPAPTFKLASNSPMFNRMSDDMDINCGQIIDGDKTIQQMGQEIFERL
LTHASGDKTKSELNGLGEDEFCPWQIGVLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory