PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3767 (762 amino acids)

SeqID: PfGW456L13_3767 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3767
MAVAHSLGFPRIGRDRELKKAQEAFWKGELDEAGLRTVGRDLRKTHWDLQKKAGIELLPV
GDFAWYDQVLTHSLMFGVIPERFRPHDGKASLQTLFGMARGVSDSCCGGAHAQEMTKWFD
TNYHYLVPEFSADQQFQLGWDQLFEEVEEARALGHNVKPVIIGPLTYLWLGKAKGVEFDK
LELLDRLLPLYGQIFQRLAAQGVEWVQIDEPILVLDLPQDWKNAFERAYNLIQRDPLKKL
VATYFGGLEENLGLAANLPVDGLHIDLVRAPEQYPTILDRLPAYKVLSLGLVNGRNVWRC
DLENALATLQHAHERLGDRLWVAPSCSLLHSPVDLGREDKLDAELKSWLAFAVQKCEEVA
VLAQAVNEPEAPKVLEALTQSRAVQASRAASPRIHKPAVQARVAAITVKDSQRHSLFARR
IEKQRAGLNLPLFPTTTIGSFPQTASIRLARQSYKQGKLTEAEYTEAMHSEIRHAVQVQE
NLGLDVLVHGEAERNDMVEYFAEQLDGYVFTRFGWVQSYGSRCVKPAVIFGDLSRPKAMT
VEWIRYAQGLTDKVMKGMLTGPVTMLMWSFPREDVTREVQARQLALAIRDEVVDLEAAGI
KIVQIDEAAFREGLPLRQAQWQHYLDWATEVFRLCASGVRDETQIHTHMCYSEFNDVIES
IAAMDADVITIETSRSDMELLDAFEAFAYPNEIGPGVYDIHSPRVPDSSEMANLLRKAAK
RIPADRLWVNPDCGLKTRGWPETEAALVHMVNAARQLRKEWA