PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_3912 (305 amino acids)

SeqID: PfGW456L13_3912 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597142: binding protein component precursor of ABC ribose transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_3912
MLAAASAALPVSSAFAETTEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGEFDLISNG
IKDETDTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGITVINIDNQLDPAV
VKSKNINVPFVGPDNRKGARLVGDYLAKQLKAGDEVGIIEGVSTTTNAQQRTAGFKDAME
AAQIKVVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAVSAVRAAGKAGKV
QVVGYDNINAIQPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDGGANGVIETPV
ELVTK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory