PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4528 (504 amino acids)

SeqID: PfGW456L13_4528 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4528
MDTLGYLSHGFGVALTPYNLVTALSGTLIGTVVGLLPGLGPINGVALLIPIAFALGLPPE
SALILLAAVYLGCEYGGRISSILLNIPGEASTVMTTLDGYPMARQGLAGVALSLSAWSSF
IGAFIATCGMVVFAPILAKWAIAFGPAEYFVLMVFAIVCLGGMAGDRPLKTFIAALIGLF
LSTVGIDANSGVYRFTGDNIHLTDGIQFVVLVLGLFSISEILLLLEKTHRGQEAFQATGR
MLFNFKEAASVFWVNMRCGVLGFIMGVLPGAGATLASAVAYMTEKRIAGPSGKFGQGDKR
GLAAPETAIGAEACGALVPMLTLGVPGSGTTAVMIGALSLYNITPGPLLFQQQPDIVWGL
IASLFIANIMLVILNIPMIRIFTKILAVPNWALVPMIAIITAIGVYAVHATTFDLFLMIG
IGIFGYILRKLDFPLSPVLLGFILGGLMEQNLRRALSISNGSLDILWSSGITVGVWGLIV
VMLLVPIVRIWRKRSVAQRVVADV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory