PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4567 (763 amino acids)

SeqID: PfGW456L13_4567 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4567
MKKLCLLGLFVSLASHNVLAATTPAPLENKEAFVSNLMKQMTLDEKIGQLRLISIGPEMP
REMIRKEIAAGNIGGTFNSITRPENRPMQDAAMRSRLKIPMFFAYDVIHGHRTIFPIPLA
LASSWDMDAIGLSGRIAAKEAAADSLDITFAPMVDISRDPRWGRTSEGFGEDTYLVSRIA
GVMVKAFQGTGANAADSIMASVKHFALYGAVEGGRDYNVVDMSPVKMYQDYLPPYRAAID
AGAGGVMVALNSINGVPATANTWLMNDLLRKEWGFKGLAVSDHGAIFELIKHGVAADGRE
AAKLAIKAGIHMSMNDTLYGKELPGLLKSGEIQQSDIDNAVRAVLGAKYDMGLFKDPYLR
IGKAEDDPVDTYADSRLHRAEARDVARRSQVLLKNRNDTLPLKKTAKIALVGPLAKAPID
MMGSWAAAGRPAQSVTLFDGMTNALGDKSTLIYARGANITSDPKILGYLNFLNFDAPEVV
DDPRPANVLIDEAVKAAKDADVVVAAVGESRGMSHESSSRTDLNIPENQRELIRALKATG
KPLVLVLMNGRPLTILEEKEQADAILETWFSGTEGGNAIADVLFGDYNPSGKLPISIPRS
VGQIPTYYNHLTIGRPFTPGKPGNYTSQYFDDTTGPLYPFGYGLSYTEFSLSDMALSSTT
LNKTGKLDASVTVKNTGKRDGETVVQLYIQDETGSMIRPIKELKNFQKVMIKAGEQKVVH
FTITEDDLKFYNTQLKYAAEPGKFNVQIGLDSEDVTQQSFELL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory