PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4805 (803 amino acids)

SeqID: PfGW456L13_4805 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4805
MSTDGALSRSRLLPTLLGILLLLMGLAMLAGGIKLSMLGGSLYYLLAGIGIALSGVLLIA
ARRAALGLYALVLFASTVWALWEVGLDWWQLVPRLALWFALGVVMLLPWFRRPLLINGPA
PMGTGALSVAVVLAGATAVASQFTHPGETFGELGRDTADMTSTAPQMPEGDWQAYGRSEF
GDRYSPLKQITPANVGKLQEAWRIQTGDLPTADDPVELTNENTPLKANGMLYACTAHSKV
LALDPDTGKELWRFDPQIKSPVGFKGFAHMTCRGVSYYDEAAYAKSESAASAVISEAGKA
VAQACPRRLYLPTADARLIALNADTGKICEGFGKNGVVDLTQGIGPFTAGGYYSTSPAAI
TRDLVIMGGHVTDNESTNEPSGVIRAFDVHDGHLVWNWDSNNPDATEPLPEGEHYSRNSA
NMWSLASVDEKLGMVYLPLGNQTPDQWGADRTPGAEKFSAGLVALDLATGKVRWNYQFTH
HDLWDMDVGSQPTLLDMKTADGVKPALIAPTKQGSLYVLDRRDGTPIIPIKEIPAPQGAV
KGDRTAPTQARSDLNLLAPELTEKAMWGASPFDQMLCRIQFKELRYEGQYTPPSEQGSLI
YPGNVGVFNWGGVSVDPVRQMLFTSPNYMAFVSKMVPRAEVAADSKRESETAGVQPNTGA
PYAVIMHPFMSPLGVPCQAPAWGYVAGIDLTTSKVVWKRKNGTSRDSSPLPIGLPLGVPS
MGGSMVTAGGVGFLSGTLDQYLRAYDVNTGNELWKSRLPAGGQATPMTYTGKDGKQYVLL
VVGGHGSLGTKMGDYVIAYKLSE