PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4820 (393 amino acids)

SeqID: PfGW456L13_4820 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1171003: Probable phosphoribosylglycinamide formyltransferase 2]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4820
MTRIGTPLSPTATRVLMCGCGELGKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVIN
MLDGAALRSVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRL
AAEELDLPTSPYHFADTFEDYSKAVEDLGFPCVVKPVMSSSGKGQSLLRSVDDVQKAWDY
AQEGGRAGKGRVIIEGFIDFDYEITLLTVRHVGGTTFCAPVGHRQEKGDYQESWQPQAMS
PVALAESERVAKAVTEALGGRGLFGVELFIKGDQVWFSEVSPRPHDTGLVTLISQDLSQF
ALHARAILGLPIPLIRQFGPSASAVILVEGQSTQTAFANLGAALSEPDTALRLFGKPEVN
GQRRMGVALARDESIEAARAKATRASQAVVVEL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory