PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4854 (559 amino acids)

SeqID: PfGW456L13_4854 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4854
MSMLKDPSSKYRAFPTIDIPDRTWPSKTITAAPIWCSSDLRDGNQSLIEPMDAVKKLRFW
KTLVQVGVKEIEASFPAASQTDFDFVRTLIEGNHIPDDTTIQVLTQGREDLIERTFESLR
GAKKAIVHLYNATSPSFRRIVFNQDKDGVKAIAVNAAKLFVKYAAMQPDTEWTFEYSPET
FSATEMEFAKEVCDAVIEVWNPTPEHKMILNLPATVECATPNIYADQIEWFGRHINRRDS
VIISLHTHNDRGTGVAATELGLMAGADRVEGCLFGNGERTGNVDLVTVALNLYTQGVNPE
LDFSDIDGVRKVVEECNQIQVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQKPDALWEVP
YLPIDPADIGRSYEAVIRVNSQSGKGGIAYLLEQEYGISLPRRMQIEFSQVVQRETDRLG
LEMTAQQIHALLHSEYLQANTPYALVSHRLQEENGHSAVEVEVASQGQGETNLHWRGKGN
GALEALVAGLPVPVEIMDYNEHAIGAGTNAKAAAYIELRVNGERAVHGVGIDENITTASF
KALFSALNRSLSQPEAKAA