PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4890 (547 amino acids)

SeqID: PfGW456L13_4890 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4890
MMATKIIPPADGAYAYPLLIKQLLLSGVRYEPGREIVYADKLRYSYQTLNKRIRRLANAL
TAAGVKAGDTVALLDWDSHRYLECFFAVPMIGAVLHTVNIRLSPEQVLFTMNHAEDDLVL
VHDDFLPLVEQIHGRLETVKGYLQLTDDEATTTSLPVLGEYEHLLSLASDQYDFPDFDEN
SVATLFYTTGTTGDPKGVYFSHRQLVLHTLNAVGTLGVYQGQPLLRSDDVYMPITPMFHV
HAWGVPYVATLMGIKQVYPGRYEPNSLVKLYREEKVTFSHCVPTILQMILNCEEGKATRF
DGWKMLLGGSALTLGVASEANAKGMVVHAGYGMSETCPLLCLTYLRDEDLQLSAEAQLPI
RIKTGTPVPLVDLKIIDADGNDVPHDGESLGEIVVRAPWLTQGYLKAPDKGAELWHNGWL
HTGDMASIDKLGGVEIKDRIKDVIKTGGEWISSLELESLISEHPGVMSVAVVGIADEQWG
ERPMAMVVCEPGQYLDRKILETHLQAFVDGGRINKWAIPKQFKFVAEIPKTSVGKINKKL
IRETEAN