PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4938 (393 amino acids)

SeqID: PfGW456L13_4938 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4938
MLSAQDRAIVKSTVPLLESGGEALITHFYRMMLSEYPQVRPLFNQAHQASGDQPRALANG
VLMYARHIDQLDQLGDLVAKIINKHVALQILPEHYPIVGSCLLRAIAEVLGEEIATPEVI
AAWGAAYGQLADILIGAETSIYDQKEQAPGGWRGAREFIVADKVEESAEITSFYFEPADK
GPILLAEPGQYIGMKLILDGEEIRRNYSLSALANKGQYRISVKREAGGRASNFLHDQLHV
GASIQLFPPSGEFVLTASDKPLVLISGGVGITPTLAMLEAALETQRPVHFIHCARNGSVH
AFRDWIDGLAERHPQLKRFYCYSEDDGVSPAAHKMGLLSQQQLHQWLPQERDLDAYFLGP
KGFMVAIKRHLKALGVPEKQSRYEFFGPAAALE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory