PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_4954 (458 amino acids)

SeqID: PfGW456L13_4954 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600572: L-serine dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_4954
MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALVDHGFLADVRRVEIRLYGSLSATGVG
HATDRACVMGLMGEWPDRIDPTTIDSRIHTLRETGKLCLAGVAQIAFDWQRDLLLLDESL
PYHPNAMSLTAFGETGELFEQTYYSVGGGFIIEAAEAESGIAPAGDVVLPYDFSSAAELL
KLCNEHGLRVGELMMANERAWRSDAEIRQGLLHIWSVMRECVEQGLRHEGILPGGLSVPR
RAAKLHRSLQEIGKPNVITSTLSAMEWVNLYALAVNEENAAGGRMVTAPTNGAAGIIPAV
LHYYMKFNADASDDDVVAFFLGAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAE
VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK
HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVNWVEC