PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_5129 (531 amino acids)

SeqID: PfGW456L13_5129 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121408: Aerobic glycerol-3-phosphate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_5129
MSLDWNAAWRQRVLPTLADETWDLIVIGGGISGAGILREAARRGWRCLLLEQRDFAWGTS
SRSSKMVHGGLRYIAKGQWRLTRDSVRERQRLLDEAPGLVEPMSFMMPHYRGGFPGPRVL
GGLLSIYDALAGRRSHHFHDAQQLRYLAPGVKEDDLLGGTCFVDALTDDARLVMRVLGEA
RADGAVVLNGVRVQQLLREEGRVCGVQVEDCEGGGLLTLRCGALAVATGAWAERLRLPDA
PRQLRPLRGSHLLLPGWRLPVAQAFTFLHERDRRPVFVFPWEGATVVGTTDLDHHGDLDQ
SASISFDELDYLLAACSQQFPQAEVVAADVLSTWSGVRPVVGSAAGEHQDKPSNETREHV
LWQEPGCVTLAGGKLTTFRPQAIEVLKACATMLDRPFVDDATPVFAAVPPLAIPGLSANR
WRRLAGRHGRDLPRLAQLIAELGHDTVGGTDTLWAELAVACDGEMVLHLDDLLLRRTRLG
LLLPRGGEDYFAAIRQLCQPRLGWDDEHWQQELQRYRALWQRHHGLPDAAH