PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on PfGW456L13_929 (360 amino acids)

SeqID: PfGW456L13_929 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15595498: polyamine transport protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>PfGW456L13_929
MLRNAMLVGAGLTVAVSVQAAGTVHIYNWSDYIGETTLADFQKETGIKPVYDVFDSNETL
EGKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSQLPNYSNLDPVLLKRLEQNDPGNL
YAVPYLWGTNGIGYNVDKVKAVLGVDTIDSWGVLFEPQNIKKLQSCGVAFLDSADEMMPT
VLNYMGLNANSTDPKDYEKATAKLLAVRPYVTYFHSSKYIADLANGDICVAIGFSGDIFQ
AKNRAEEAKKGVNIAYSIPKEGGALWFDMLAIPKDSANVKQAHAFINYLLKPEVIAQVSD
YVGYANPNPGSDKLMEQSIRTDEAVYPPQEVLDKTYVSVELPPNIQRLMTRSWTKVKSGK