PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS03755 (517 amino acids)

SeqID: RR42_RS03755 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS03755
MSITVFVPRDSSALAMGADAVARAIAREAAARGASIELVRNGSRGMFWLEPLVEVQTTAG
RVAYGPVTPEDVAALFDAGFLAGGAHALALGLTEEIPFLKGQERLTFARMGITDPLSLAD
YIAHDGYAGLTRALTLDGAQIVQEVTDSGLRGRGGAAFPTGIKWQTVHQAQSPIKYVVCN
ADEGDSGTFSDRMVMEGDPFMLIEGMTIAGLAVGAEHGYIYVRSEYPHAIAVLESAIGIA
QAAGWLGDDLRGSGRRFRLDVRKGAGAYVCGEETALLESLEGKRGVVRAKPPLPAIEGLF
GKPTIINNVISLATVPVILARGAQFYRDFGMGRSRGTLPFQIAGNVRQGGLVEKAFGVTL
RELLEGYGQGTRSARPIRAVQVGGPLGAYLPVSRLDTPMDYEAFAAFGAVLGHGGIVVFD
DTVDMARQARYAMEFCAIESCGKCTPCRIGSTRGVEVIDKIIAGDQPVKHVKLVRDLCDT
MLGGSLCAMGGMTPYPVLSALDAFPEDFGVAVPAKAA