PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS04390 (306 amino acids)

SeqID: RR42_RS04390 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2507365: Glutamate/aspartate periplasmic-binding protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS04390
MKSQVRSNRFSRCLLAVAMLAGTAGAVSNAHAADGDTLRKIKETGVISLGYRESSIPFSY
TNGRDVMGYSHEILLQIVDKVKAQLQNPKLDIKLVPITSQNRISLMQNGTIDIECGTTTN
NLERQKQVAFSNSLFVYGLRMLTRKDSGVKDFPDLKDRNVVTTAGTTDERLLVKMNGEKT
MNMNLISAKDHGQSFLILETGRAVAFVMDEPLLYGELTKAKSANDWTVVGTPLQTENYAC
MFRKDDPSFKALADGVIADLMTSGRAEQLYKKWFQSPIPPRNINLNYPLSADMKDLYAHP
NDKAFQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory