PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS04465 (371 amino acids)

SeqID: RR42_RS04465 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598361: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS04465
MAEQGKQFGPEYVRAISPYVAGKPISEVAREFGLVESTIVKLASNENPLGMPESARTAIA
AAVADLGRYPDANGFALKGALSARFDVPPDWLTLGNGSNDILEIAAHALVKPGESIVYAE
HSFAVYALATQEVGARAIEVKARDYGHDLDAMAVAIAPDTRLVFIANPNNPTGTFLPAAE
IETFLAKVPADVVVVLDEAYNEYLDDAQQYDSIAWVRKYPNLLVSRTFSKAYGLAGLRIG
YAVAQPALTDLLNRIRQPFNVNSLAQAAAVAALGDAAFLQRSAELNRAGKAQLVAAFDRL
GLQYVPSSGNFVLVRVGRDDGAGARVNLALLKQGVIVRPVGNYNLPQWLRITIGLPEENA
AFIAALEKALK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory