PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS05465 (512 amino acids)

SeqID: RR42_RS05465 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596414: probable 2-isopropylmalate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS05465
MSDKLIIFDTTLRDGEQSPGASMTREEKIRIARQLERLKVDVIEAGFAASSNGDFEAIRS
IAQVVKDSTICSLARANDRDIARAAEALKPANSFRIHTFIATSALHMEKKLRMTPDQVFE
QAIQAVRFARQFTDDIEFSPEDGSRSDMDFLCRVLEGVIKEGATTINLPDTVGYAVPEGY
AGLIRSVRERIPNSDKAIWSVHCHNDLGMAVANSLAAVKLGGARQVECTINGLGERAGNT
SLEEVVMAVKTRRDYFDMDVGVDTTQIVPASKLVSQITGFVVQPNKAVVGANAFAHASGI
HQDGVLKARDTYEIMRAEDVGWSANKIVLGKLSGRNAFKQRLQELGIELESEGEVNAAFT
RFKELADQKSEIFDEDIMAIVSDEAHDVNEHFRFISLSQHSETGERPHARVVFNMDGNEV
TGEGEGNGPVDATLHAIEGKVASGAELVLYSVNAITAGTQAQGEVTVRLSKGGRIVNGVG
TDPDIVAASAKAYLAALNKLHDKAVQKINPQI