PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS05540 (792 amino acids)

SeqID: RR42_RS05540 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 3183546: NADH-quinone oxidoreductase subunit G (NADH dehydrogenase I subunit G) (NDH-1 subunit G) (NUO7)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS05540
MVELEIDGKKVEVAEGSLVMEAARQLGTYIPHFCYHRKLSIAANCRMCLVEVEKAPKALP
ACATPVTPGMKVFTNSEKAVKAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGASE
SRYKEEKRVVFHKNVGPLISMEEMSRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTF
VGQTVDSELSGNMIDLCPVGALTSKPFRYSARTWELARRKSVSPHDGLGANLVVQTKNQR
VMRVLPLDNEAVNECWLSDKDRFSYEGLNSPDRLTKPLVKQGGEWMETDWQTALEYVANG
LASIKRDHGADQIAALASPHSTLEELHLLGKLVRGLGSDNVDFRQRQTDFSAAIKGAPWL
GLPIADVSALQRVLVIGSALRKDHPLLAARLRQAGKKGARVAVLGASADDLLMPLAARID
VAPSGWTAALAGVARAVAAAKGVAAPAGTDGFDGDDKARLVADALLSGERRAVFLGNEAV
RHPQFAALHALAQWIATETGATLGFLTEAANTVGGYIAGALPQNGGANAQAMFDTPRRAY
VLLNTEPEFDAANPTQALAALAQAGTVVVLSAFRSDAALQYADVILPVTPFTETAGTFVN
CEGLPQSFNGVVRALGDSRPGWKVLRVLGNLLDVPGFDFETAESVRDEVLAKPVAPQLNN
GTDAAIRVTAQVAGGIERIADVPIYHADPIVRRADSLQLSAAARRAMQAGLSADLFASLG
VQAGDPVRVTQGQGSVVLPAALEAMLPAGTVRVSAGTVAATTLGAPSGTVTVEKAIDLAA
TAKGAAEPAATA