Running PSORTb v3.0 on RR42_RS05600 (372 amino acids)
SeqID: RR42_RS05600 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Periplasmic [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15596217: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Periplasmic 9.80 Cytoplasmic 0.19 CytoplasmicMembrane 0.00 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: Periplasmic 9.80 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>RR42_RS05600 MNFNLSDEQKQLADAVHRFIDKDYDFETRKKGIKAEAGHSDAAWGALVELGLTALPVPEA QGGFSGTPIDMMVVMQELGRGLVVEPYFATVVAAYALKLAGGQDALLEQVAGGELKLATA FNEPHARYALNDVRVTAKGGKLNGRKVVTIHGAQAGKLVVSARTSGADADTSGISLFLVD PKAAGVSITDYRTIDNLRAADITFKDAQGELLGTEGAAFALIEQVADYAAVLLCAEAVGV IDTLNAATLEYAKTRQQFGVPIARFQALQHRMVEMFIHAEQSRSITLLAAAKFDEASPEE RRRFASAAKARVGQAARSVGQEAVQIHGGMGVTDELPAAHMFKRLTLINTTFGDVDHHLS RFATQPGFLETA
Lawrence Berkeley National Laboratory