PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS05990 (398 amino acids)

SeqID: RR42_RS05990 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230871: Aspartate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS05990
MSLFSAVEMAPRDPILGLNEAFNADTRATKVNLGVGVYFTDEGKIPLLRAVQEAEKARLT
TATPRGYLPIEGIAAYDQAVQTLLFGKESPLITEGRVVTAQALGGTGALKIGADFLKRLY
PDAKVAISDPSWENHRALFEAAGFPVINYAYYDAASHGLNFAGMVESLKSYAANTIVVLH
ACCHNPTGVDLSAEQWKQVVELIKERNLIPFLDMAYQGFAEGIEPDGAAVRLFAESGLPF
FVSSSFSKSFSLYGERVGALSIVTTGKEEAQRVMSQVKRVIRTNYSNPPTHGGTVVATVL
NSPELRAMWEQELGEMRDRIKLMRHALVDKLAAKGVPGDFSFVKSQRGMFSYSGLNSAQV
DVLRNEHGIYAVGTGRICVAALNSRNIDAVVNAIAAVL