PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS07380 (594 amino acids)

SeqID: RR42_RS07380 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71159292: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS07380
MSVIEVQVPDIGDFDAVEVIEVLVKAGDTVEQEQSLIVLESDKASMDVPSSAAGKVVEVR
IKVGDKVAKGAVICTLESEAAAKPAAAPVSAPAPAPAQVSAPAAAPAPVAAAHAGSADIT
CDMLVLGAGPGGYSAAFRSADLGMNTVLVERYSTLGGVCLNVGCIPSKALLHNAAVIDEA
KALAAHGILFGEAKIDLDGLRHYKETVVGKLTGGLAGMAKARKVQVVRGIGTFLDPHHLE
VQETEGDAKATTGKKTVIRFEKAVIAAGSQAVKLPFIPEDPRIVDSTGALELPEVPNKML
VIGGGIIGLEMATVYSTLGASIDVVEMLDGLMQGADRDLVKVWDKMNKKRFDKVMLKTKT
VGVEAKPDGIYVKFEGEQAPAEPQRYDLVLVSVGRVPNGKRIGAEKAGVAVTDRGFIDVD
KQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDVKQIPSVAYTDPEVA
WAGVTEDQCRAQGIKYSKSVFPWAASGRAIANGRDEGFTKLIFDEETHRIIGGGIVGTHA
GDLISEVCLAVEMGADAVDIGKTIHPHPTLGESIGMAAEIYEGVCTDVPPPRKR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory