PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS09080 (436 amino acids)

SeqID: RR42_RS09080 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS09080
MSTVLVSLILLVVMIGFLVIGAWIPVAIAVTSWVGLVVFADRDALVNLANAWWSSSASYT
LASLPLFVWMGEILFRTKLSEQMFNGLSPWLNWLPGRLMHVNILGCGIFGSVSGSSAATC
ATIAKSALPELTRRGYDERVTLGSLSCAGTLGILIPPSITMVVYAVSADVSIIRVFLAGF
LPGLLLMLLFSGYIVVWALSNPDKTPKAEAFNWRSRLASIRQLMPCIVLIAFITWIMITG
YSTATEAAAYGVVASLALAWVGGSLTRKAFWESLMSATRLTAMIMFVLGATSFLSVTMSF
TGIPRALAEWVASMHLSPWALIAVLTVIYILLGTALDGISMIALTTATVLPMVQAAGFDL
VWFGIFIVLLVEIAEVTPPVGFNLFVLQSMTGKDSNYIARVSLPFFMMMVVAIGIVTVWP
QIVTWLPDVVMQKELK