PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS09125 (755 amino acids)

SeqID: RR42_RS09125 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS09125
MKRRAFLVAGIGGAGALLVGWSVLPPRQRLATSQPLPAVGTQVGLNGWVKVAADNTVTIM
MCRSEMGQGVHTGLAMVLADELDANWAQVKVEHAPVDKIYNNLEVVVEDLPFRADDDGVA
RHLAAWLTRKLMREIGEMVTGGSSSLNDLWNPMREAGASARAMLIGAAAARWNVPAGACR
AQDGKVLHPSGKTATFGELAAQAGQLPLPAKVALKTPSEFKLIGKDIRRIEAASKIDGTA
RFGIDVLPEGLLYASVTMCPTLGGTVASFDGAVAAAMPGIVKVLAVDAYNGGTGGVAVIA
DNAYRAMKALDAVKIVWNPGAAASLSSPEVSRRLAQALDASDGHAYYRHGDVDAALKSAA
KPVSAEYSAPYLAHGAVEPINCTVQVRDGAARVWVSTQLPGLARRAVSKVLGIDADKVDV
QPQLIGGAFGRRLEVDFISQAAAIARAGGGRPVQTIWSRVQDTTHDFYRPACLSRFKAGL
DGAGNLVAWHNTSASQAVVPAMLARLLGLPGLGIDKTTTEGAFDRPYEWPNARVGHVIVD
LPVPVGFWRSVGHSHQAFFTESFIDELAAAAGKDPVAFRAGLLARHPRHLAVLHMAADKA
GWAKPLGKTADGAARARGVALHEAYGSIVAQVAEVSVAPDKTVRVHRVVCAIDCGLPVNP
NLIRQQMESAIIFGLSAALFEEITIVDGQVHQKTFGDFPVIFMNNCPAIETYIMPSQDHP
QGVGEPGTPPIAPAVANALFALTGQRLRALPLKLA