PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS09480 (244 amino acids)

SeqID: RR42_RS09480 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS09480
MPIVEAQGVHKSYGPVEVLKGVSFAIEPGQVVAIIGRSGSGKSTMLRCLNGLETINAGNI
TVAGHKLDHDRKRLLDLRRDVGMVFQSYNLFPHLTVGENIALAPAIVKKMATDKIDGIVD
QVLAQVGLQDKKDCYPEQLSGGQQQRVAIARSLAMEPKVMLFDEVTSALDPELTAEVLRV
MENLAASGMTMVLVTHEMEFARRMAHTTIFMHQGKVHEAGPSKALFAQPRTPELQQFLSA
GALK