PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS10085 (1020 amino acids)

SeqID: RR42_RS10085 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS10085
MPSVTMRRLPIYGSTSERAAASQMTAFTTALQAYTGQVFGDYDTLHDFSVREYRTFWQCF
VQWSHGLAWSGSTEPVCVGDECEHARFFPQVQLNYADNLLGQAVAAPDTPALTACHADGR
RVRLTRGELRNRVARLAHALSELGLRDGDRVVGVMRNDADAVVAALAVTALGATLSTAAA
EMSVETILDRFAPLAPRLLFAHVAEREFDTGMSLADNVADLAAALPSLQGVVRLDDGTLP
GTVKQRIYSLGELIDSGDAGSFVWRRFPFNHPLFIMFSSGTTGKPKCIVHGAGGSLLEHL
KEHRLHCDLRPGDRLYFHTTCAWMMWNWQLSALASGAEIVTYDGPISTVDALWRLVADER
VTVFGTSPAYLKMCEDAGLVPGQQFDLGALRAMMSTGAVLFDAQFEWVRDHVKPLPLQSI
SGGTDILGCFVLGNPNLPIYAGEAQCKSLALDVQAWEQGAHTSRIGELVCANPFPSRPLG
FFGDMDGKGFHAAYFTRNPGVWTHGDRIEFSPEGTARLHGRSDGILNVRGINVGPGEIYR
VLSDIRDIREALVVEQRSCAAPPDRTHAERYDQRIVLLLVLQDGVALTGALATRVRRDLA
RRASPAHVPDLIIAVDELPVTHNGKLSEAAARNAINGLPVGNAAALRNPGCLDSIQNHPA
LNLAARELPPACDSREQLERHLQVLWEKLFHFAPIGRDDNFFDLGGHSLLGARLLADVHQ
STGRTIPLATLLIAPTIARLAAAIDEGAPPPPSPILVPVRAGTGTPLFLVHGLSGSVMEC
WGLVCALRSPRPVYGLQARGLDGEQLTQRRVEDMAASYIEQMRTVQPDGPYALAGYSFGG
LVAFAIAQQLSCAGEHIEFLCLLDTYVHEHFLPWSAWMQHRCSYLGERWRKLRAVPASQL
FGYLTYMLGRAADRVRMSRGRMRRRPDPFTESLPPALRRVRETMGLAMTTYRPRPYHAGP
IVYVRAAIRQQDRGDPISLWRRVARGGLMISEVPSGHNDMLVEPNLQVVAALLDEGLANA