PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS11100 (509 amino acids)

SeqID: RR42_RS11100 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00218: AMINO_ACID_PERMEASE_1 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34395946: Lysine-specific permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS11100
MSSHPHPHQHPVVEHDDLQRKLKARHLTMIAIGGAVGTGLFVASGASISQAGPGGALLMY
CLIGLMVYCLMTSLGELAVHMPVAGSFVTYSALYVEEGFGFALGWSYWFSLAVTIAVELA
AAQLVMQYWFPHVSGVVWSAGFLLLMFGLNAFSVRGFGEAEYWFALIKVATILIFLAAGL
MMIFGIMQGGPQSGWHNFTLGDAPFVGGIPAMFGVAMIAGFSFQGTETVGVAAGEAADPA
RTIPRAIRQTFWRILLFYVLAILIIGVLIPYTDPSLLRNDVTDIGVSPFALVFRHAGLAF
AAGLMNAVVLTALLSAGTSSMYASTRILYGLAVSGRAPRALARLSANGVPYVALFATTAV
GALCFLSSLFGDKAVYLWLLNTSGMTGFIAWLGIAISHYRFRRGLVHQGYKPSDLAYRSP
LYPFGPLFAIVLCVVIVLGQNYQAFSDVRGRWLEIVGTYIGVPLFLVLWLGYRLVKKTRL
IDYEDMPFNCKRAAEAGPAAASLPRHSAG