PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS11275 (396 amino acids)

SeqID: RR42_RS11275 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS11275
MAHVPQIKIPATYIRGGTSKGVFFRLQDLPEAAQVPGAARDALLMRVIGSPDPYGKQIDG
MGAATSSTSKTVILSKSSKPDHDVDYLFGQVSIDQPFVDWSGNCGNLSAAVGPFAISAGL
VDPSRIPHNGVAIVRIWQANIGKTIIGHVPITNGAVQETGDFELDGVTFPAAEVQLEFMD
PAAEEDGAGGAMFPTGNLIDDLEVPGVGTLKATMINAGIPTIFLDAESIGYKGTELQDAI
NGDPKALAMFETIRAHGAVRMGLIKHIDEAATRQHTPKVAFVAKPADYVASSGKQVAAGD
VDLLVRALSMGKLHHAMMGTAAVAIGTAAAITGTLVNLAAGGGARNAVRFGHPSGTLRVG
AEASQVDGEWTVTKAIMSRSARVLMEGWVRVPGDAF