PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS11305 (432 amino acids)

SeqID: RR42_RS11305 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363851: Hexuronate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS11305
MKHIKGMRWWMVSLVTMGLIVNYLARNTLSVAAPTMMSELHMTTQQYSYVVVAWQVCYAM
MQPVAGLVLDAIGTKIGFGIFALAWSLACAAAALASGWQGLAFFRGLLGLAEAAGIPGGV
KATTEWFPAKERSIAIGWFNIGSSIGALCAPPLVVWTILNGGWQRAFIIVGALGVAWTVL
WMLCYKHPKNQQRLSDQEREYILAGQEAQHKDANMAKASWLEIMRSRNFWSIAIPRFLSE
PAWQTFNAWIPLYMATERHMNIKEIAMFAWLPFLAADIGCVLGGYLSPWFHKHLKVSLFT
SRKLVMLVGCLAMIGPACVGLVDSPYSAIALLCVGGFAHQTLSGALYSITSDAFGKNEVA
TATGLAGMSGYLGATLFTLLFGIAVTHIGYSPLFVLLAVFDLIAAAIVFLMARERAAPGA
AAANLGSPALHS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory