PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS11485 (580 amino acids)

SeqID: RR42_RS11485 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS11485
MRTLRVMMVLAATTASLVAQAAVTDAMIENDAKSPGDVLSWGMGPQGQRFSTLNRINTKN
ISQLVPAWSFSFGGEKQRGQEAQPLIHDGKMFVTASYSRIYALDLKTGTKLWKYEHRLPE
GIMPCCDVVNRGAALYDNLVIFGTLDAQLVALDQKTGKVVWKEKIEDYAAGYSYTAAPLI
VKGMVLTGISGGEFGVVGRVEARDAKTGQMVWSRPVVEGHMGYKYDKDGNKTENGVTGTQ
NASWPGETWKTGGAATWLGGTYDPQTGLAYFGTGNPGPWNSHMRKGDNLYSASTVALDPA
TGKIVWHYQNTPNDGWDFDGVNEFVTFDQDGKRLGGKADRNGFFYVNDATSGKLVNAFPF
VKKITWASSIDLKTGRPNMIAESRPGDPAAGGDPKKGQSVFAAPGFLGGKNQQPMAYSPQ
TGLFYVPANEWGMDIWNEPVGYKKGAAFLGAGFTIHPLNEDYIGSLRAINPKTGKIEWEV
KNYAPLWGGVMTTAGGLVFWGTPEGYLKAADAKTGKELWKFQTGSGVVAPPVTWEEGGEQ
YVAVVSGWGGAVPLWGGEVAKRVNFLEQGGSVWVFKLHKS