PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS12000 (317 amino acids)

SeqID: RR42_RS12000 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498162: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS12000
MNTPVIAIHGGAGTITRAAMSPAKQAEYTAALSAVLEAGQRVLADGGSALDAVTEAVRLL
EDCPLFNAGRGSVLTHAGTYELDAAIMDGATLGAGAVACVKHLRNPVLAARAVMEKSQHV
LFAGEGAEAFAQAQGLELVTPDYYFTQARTDQWERARAGSGTTLLDHDAATLAAEPIDPD
TKFGTVGAVAFDAQGRLAAATSTGGVTNKQVGRVGDTPIVGAGCFADDVAAVSATGTGEM
FIRTVAAYDVAAQMRYAGVPLEEAARRVVMEKLPAIEGRGGLIAVDREGNVTLPFNTEGM
YRGFARVGEPVNVWIYG