PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS12930 (478 amino acids)

SeqID: RR42_RS12930 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124106279: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS12930
MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNAYDDPKDEPRLGGTCLNVGCIPSK
ALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLL
KGYGKFVGKTAEGFQVEIAGKAGTEVVTAKQVIVATGSKARHLPGIAVDNVLVSDNEGAL
KFAGVPKKLGVIGAGVIGLELGSVWRRLGAEVTVLEALPSFLGAADEGVAKEAQKLLTKQ
GLKFSLGVKVNEVKTGKDNVTVSYTDKDGAAQTLEVDRLIVSVGRVPNTDNLGLDAIGLA
ADQRGFIEVDDHCATSVPGLWAIGDVVRGPMLAHKAEDEGVAVAERIAGQKPHIDYNCIP
WVIYTFPEIAWVGKTEQQLKAEGREYKSGQFPFMANGRALGMGHSEGFVKMLADAKTDEI
LGVHVVAANASDLIAEAVVAMEFKAASEDIGRTCHPHPSMSEVMREAALAVDKRQLNM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory