PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS13475 (448 amino acids)

SeqID: RR42_RS13475 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599943: phosphoglucosamine mutase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS13475
MTRKYFGTDGIRGRVGEAPITPDFVMRLGYAAGMVLAHGAKQHDQARPTVLIGKDTRISG
YMLEAALEAGFTSAGVNVLLTGPLPTPGVAYLTRALRLSAGVVISASHNPYYDNGIKFFS
ADGDKLPDAVEMAIEQALEEPMVCVRSDDLGRARRIEDAAGRYIEFCKSTFPYEQDLHKL
KLVVDCAHGAAYHIAPHVFHELGADVISIGNQPDGRNINAGYGATAPEKLIEAVKANGAD
LGLAFDGDADRLQVVDRDGRLFNGDELLYLIVQDRLQAGQAVEGAVGTLMTNMAVELAFQ
RQGVEFVRAKVGDRYVLEELNKRKWTLGGEGSGHLLCLDRHTTGDGIVSALQVLAALRRS
GKTLSQLLEGVSLFPQTLINVRVEKGFDWQSHAGLSAARAVIEPQLAGRGRVLIRASGTE
PVVRVMVEAEKVETAEQAAQTLADALRA