PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS16955 (395 amino acids)

SeqID: RR42_RS16955 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS16955
MAFAEYPVQSLMYITNRPELVFTEGKGSWLTDHNGKRYLDFVQGWAVNCLGHSNQAMIDA
LVDQSKKLFNPSPAFYNEPMLRLARQLTDASCFDKVFFANSGAEANEGAIKLARKWGRKH
KNGAFEIITMDHSFHGRTLATMSASGKAGWDTIFAPQVPGFPKADLNDLASVEKLINDKT
VAIMLEPVQGEGGVIPASREFMQGLRKLADQHKLLFIVDEVQTGCGRCGTMFAYELSGVE
PDIMTLGKGIGGGVPLAALLCKAEVASFEAGDQGGTYNGNPVMTAVGSAVISQLTAPGFL
QSVQDKGAYLREQLLALTSEFGLGGERGEGLLRALVLNKDIGPQLVEEARDMQPQGLLLN
SPRPNLLRFMPALNVTIEEIDQMISMLRTLLKKLA