PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS17610 (774 amino acids)

SeqID: RR42_RS17610 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS17610
MTSPQQPTPQDDLKQQQREALRKAALEYHEFPIPGKISVTPTKPLSNQRDLALAYSPGVA
YACEEIVADPLNAFRYTARGNLVGVITNGTAVLGLGDIGPAASKPVMEGKAGLFKKFAGI
DVFDIELDEKDPEKLVQIIAALEPTFGGINLEDIKAPECFYVERKLRERMKIPVFHDDQH
GTAIVVGAAVVNGLTVVGKDIGKVKLVASGAGAAALACLDLLLDLGMKLENIWVTDLAGV
VYEGRAELMDPEKARFAQKTDKRKLAEVIDGADIFLGLSAAGVLKQDMVQRMADKPLVLA
LANPNPEILPELVKEVRPDAVIATGRTDYPNQVNNVLCFPFIFRGALDCGATTITREMEV
AAAHAIAELARQEQSDIVATAYGIQDLSFGPEYLIPKPFDPRLIVKIAPAVAEAAMKSGV
AARPIKDMDAYRLQLQQFVYHSGTLMKPIYAAARQVDMEKKRIVFAEGEEERVLRAVQVI
VDEKLANPILVGRPAVIAHRIERFGLRLRGGIDFTVVNPEHDARFRDYSEAYFKMMARQG
ITQQYAKLEMRRRTTLIGAMLVKQGEADGMICGTVSTTAAHLRYIDQVLGGSSEVYAAMN
GLVLPGRQIFLVDTHVNIDPTAGQLAEITLMAAEELKRFGIVPKVALMSHSNFGTSEAPS
AQKMRETLAILRERAPDLEVDGEMHGDCALDPKLRDTLVPDGTLKGEANLLVCPNIDAAN
IAYNLLKVAAGNNVAIGPILLGVKAPVHILTPSATVRRIVNMTSLVVVDAAAKR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory