PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS18020 (409 amino acids)

SeqID: RR42_RS18020 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS18020
MAVNLPLPLAENLKPVAGVELGWAEAGVRKANRKDVLVVRVAQGSTVAGVFTRNRFCAAP
VQVCREHLAAGKGIRAIVVNTGNANAGTGEPGLANARATCDALAAQLGIAPEQVLPFSTG
VILEPLPVDRITAALPAAIANAKPDNWLAAAESIMTTDTQPKAASRTVQIGGKTVTLSGI
SKGAGMIRPNMATMLGFVATDATVSQDVLQALVSYAADHSFNSITIDGDTSTNDSFVLIA
SGKAGAPAIERAEGADFEALRAALTDLSQELAQMIVRDGEGATKLMTIQVEGGKDVAECR
LIAYAVAHSPLVKTAFYASDPNLGRILAAVGYAGVDDLDVERVNLWLDDVLVARDGGRNP
EYREEDGQRVMKQAEITVRIALGRGDAAATVWTCDLSHDYVSINADYRS