PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21235 (679 amino acids)

SeqID: RR42_RS21235 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598569: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21235
MQAAGTLFLVVGPSGAGKDSLMDGARAALLADPRYVFARRVITRPTGSPGEDHEGVTQVE
FSAREAANAFLITWAAHGLRYGLPASLLDELERGRHVIANGSRGIVAALAGQLRNFVVIH
VTAPLQVLAQRIAARGRESGDAVLRRLERMPDPIPAGVASVCVSNDAAMDVGIARFLEAL
RTAPAPLKARRMPIATGDAHIAYVSPAFSAGQTRMAVRSGTVEIPAALHVVESPALLQDE
EIGLSDALFDRLGAAPGSTVRLRRIPGPVSRDVLRKKLRGDALSEAEYEAVLRDAVEGRY
TEIELTAFLVAASQHLTDAEVVSVARARTRFAPRIGWDEPIVVDKHSMGGVPGSRITLIV
VPIVAAFGLAMPKTSSRAITSAAGTAEAMETVARVDLDIDDVRRCVEQARACIAWNGRLN
HSAIDDVMNAITRPLGLDTNRWSVASILSKKYTAGSTHVIVDLPFGPQAKLKSQAEAQAL
GVLFEAVGAGLGMQVRAFATHGSKPIGRGVGPALEVRDVLQVLNGSPDAPADLREKALFF
AGQILAFDPAVGSPAEGRRMAGELLACGAASAAFDRIVAAQGARAAPDAPGQHVHTVPAS
TAGVVADINGFAIAGIARGAGAPRRPGAGVDLLCTVGDRLVAGQPLFRIHAQTASDLEAG
VRAHASAELAGPPIRILAD