PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21615 (1000 amino acids)

SeqID: RR42_RS21615 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21615
MAPASPGAWQPPPEREWLAGHVIRPPVLAWQTGTLLSARLIGCDETAARALPGVATVLRR
GDFLGIAADTAPQALQAAHALRARWQAPPKAAASGLPLARRIVAEHGDAAQAMADAAGRS
AQDYPWPLAGLQAAGCSAMAEWRDGALRVWLPSRRPGALRAELAALLGIGEDRITLICWQ
APGHDEDPLYAHHAAADAALLAHSAGRVVRVRVEAHELGATQAVVNTHIESAWTRDGEIA
AYAVNTAVDARGSAAVMHAPPLALWLTRTTAPVTEIEPQASAGGDTRDDAILPPYRFDSL
SVTQADLPGQPRVESTPAQAARAHVFAHESHLDEVAAASAQDPVALRLRHLDDTRGAGLV
RRVAAQANWQPRGERPQAQQNVRRGRGFAYASTIEAGLADGGQPVHSWSAWVAEVEVDAT
TGEVSVTGVTLGHDSDAGEQGGVDAVALQQEAARAAQQLTVDGSRSDSWPAANLPAVHDA
SLPALATAQLPEVRVGGALRPASATLGTSAAVTLPAAPAVANAIFDATGVRLREPPFSGE
RIRLALAAQANPESTPKRGAARKRNWLLAGATAAAGLFVTAMPWRAPIAPVAPPGAGFYS
AATIERGRLVAAAGDCAVCHTAPNGARNAGGLALDTPFGTIYSTNITPDVETGIGNWSYA
AFERAMRQGIHRDGRHLYPAFPYTAFAKTSDGDLQALYAYLMAAEPVRAKAPETALAFPY
NLRPLMAGWNLLFHSPKPFEADPARSAQWNRGAYLAEGLGHCSACHSPRNALGAEQGGRR
YLGGGEAEGWEAPALGKLSHAPVPWTEQALFSYLRTGYAPHHGAAAGPMAPVIEELALLP
EEDVRAIAHYVASFGDAQPDAALASAQARQLEQRSADAARTLGGPAARLYQNACAVCHQS
DQGIRQFGIKPSLALNTNLHGDKPDNLIRVLLDGIPTPGTSDLGYMPAFGESLDDRQLTQ
LVHYLRKRFAPDKPAWDNVDDTLARLRAAPAHRPNHQPNH