PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS21785 (729 amino acids)

SeqID: RR42_RS21785 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599346: acetoin catabolism protein AcoB[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS21785
MSERSALRPAAEWVELRTTDEDWAKADPALLGTLLSHLHLIRGFEEAVLELAAEGLVHGP
AHSSIGQEGGAAGSIVPLTGADQINGSHRGHHQFISKALGYLAPNGIDPRAPLPADVQTL
LQRTLAEILGLAQGYCKGRGGSMHLQWAEAGALGTNAIVGGGVPMAAGAAWSHRHAGTDA
VAITYFGDGAVNIGSVLETMNLAAAWKLPLCFFIENNRYAVSTTVEESTAEPRLSARGMG
FNIPSWKVDGMDPLAVYLATREALAHMRAGKGPTIIEADLYRFFHQNGPFPGSAFGYRSK
DEEQQWRARDPLELMARRMQARGLISADDVAALRERIKQAMRDAMAALTEADPSGKPGKR
RIRPELWPSPDFRDVGIRGDLGELAGLRCEEEAGFCGKLDQRKFIDVVADVMQRRMETDP
SVVVMGEDVHRLKGGTNGATRGLRDNFPDRVLGTPISENAFVGLGGGLALDGRYKPVVEF
MYPDFMWVAADQVFNQIGKARHMFGGESDVPLVLRTKVAMGTGYGSQHSMDPAGIFATNP
GWRIVAPSTPFDYVGLMNTALACKDPVLVIEHVDLYNASGVGPVDDFDYHLPVGKAAVRR
GGSDVTVITYLSMVGHSLEAVEQTGIDAEVIDLRWLDRASIDWDTIAQSVRKTNNVLIVE
QGARGTSYGGWLADEIQRRYFDWLDQPVQRVTGAEAAPSISKVLERAAAARTEEVAEGLR
QVMRDKGAA