PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS23090 (533 amino acids)

SeqID: RR42_RS23090 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS23090
MNLTGELLIGRQSVRGTHGEIRAIDPASGETLAPAFGGATRAQLDQACALAAQAFDGYRE
TPLAQRAALLEKIAANLLALGDALIARCVSESGLPRARIEGELGRTMSQLRLFAGVVRRG
DFLGLRIDPAQPQRMPLPRVDLRLRHIALGPVAVFGASNFPLAFSVAGGDTASALAAGCP
VVVKAHPAHPGTSELVGRAIQKAVEELGLPEGTFSLLFDSGLEIAQGLVSDHRIKAVGFT
GSRAGGTALMQLAAARSEPIPVYAEMSSINPVLLFPHALGNRADAIGKAFAASLTLGAGQ
FCTNPGLILAVDGPDLERFLAAAEAAIAQIPASTMLTPGIHRAYGAGVETLGCHPQVSTV
ARGQAGAQYQGQAALFSTTAQAFLEHEALRAEVFGAASLVVRCPDLATMQRVVESLEGQL
TAAIHIDEADYDTARSFLPALERRVGRILVNGFATGVEVSHAMVHGGPYPSTSDGRSTSV
GSLAIARFLRPVCYQDMPAALLPQALRAGNPLGLAVRVDGEMQPGHQPVAHTG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory