PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS23230 (396 amino acids)

SeqID: RR42_RS23230 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596249: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS23230
MPSLPDPLIVIAPDSFKGSLAAGQVAAAIAAGIQRALPGATIRQRPMADGGEGTIDAMLA
AGGQRTGIEVRGAHGAARIATVALLAGDRAVIESAEIVGITDPAGMACPVAQRSTTGLGD
AIKALLDLGVREIFVGLGGSSTNDGGAGLLHGLGLRLLDAQGRDIPPTPAALPQLAAIDA
SQLDPRLASTRLVAMCDVTNPLTGPLGATAVFGPQKGVQAQDVDAIDAALAGYDRLLAPA
LGRHAVDAAGAGAAGGLGYALLMLGAQMRPGADIVADCVDLDGALAGADWLITGEGRSDV
QTLSGKAPLIACQRAHACGVPASLLSGAIDPAALPALGTHFTGCFSLAPGPITVEQAMAN
ASALLSDAAEQMARLRFTGTHPLEHGRPRQAGEGLH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory