PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS23750 (560 amino acids)

SeqID: RR42_RS23750 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS23750
MNHALFEKHEKTLAQALDAIRTRGYWSPFNEMPSPRTYGETAAADGEAAFKAQLGQPFVL
EQAGSSGTVGAEHSPFGFALNIGYPNAEPDALIAAAQAAQLQFRKAGPKAWVGVSLEILA
RLNQASFEIAHSVMHTTGQAFMMAFQAGGPHAQDRALEAIAYAWDAMRDIPQTAYWEKPQ
GKNPPLAMEKRFTVVPRGIGLVIGCCTFPTWNSYPGLFADLATGNAVIVKPHPAAILPLA
ITVRIARQVLEEAGFDPNVVTLMATAPNDGALVQALATRDEIRLIDFTGSTANGDWLETH
ALQAQVYTEKAGVNQIVIDSADELKAVSRNIAFSLALYSGQMCTAPQNIYVPRDGIKTAQ
GTVPFEEVAQSIADAVQKLTSDPAKAVELIGAIQNKGVLDRIEQVTKLGVPLLASQRLVH
PAYPEASVSTPVLLKLDARRDEDTFTQEWFGPIAFVIATDSTRHSLELAARIARTRGALT
LSVYSTDEQVLDAADEAAVSGGVALSVNLTGGVFVNQSAAFSDFHATGANPAANASLADT
AFVANRFRVVQSRRHVPQRT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory