PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS24700 (560 amino acids)

SeqID: RR42_RS24700 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS24700
MNQQFDYIVVGGGSGGCVVAGRLSEDPNLSVCVLEAGGHGDGMVVKVPAGAVAMMPTRLN
NWAFDTVPQAGLGGRIGYQPRGKMLGGSSAINAMVYIRGHRSDYDRWASLGNSGWSYDDV
LPYFRLSEHNERFDNAWHGRNGPLNVSDLRTDNPFQARYLEAARQAGLPLTDDFNGAQQE
GIGIYQVTQKQGERWSAARAYLHPHIGRRANLTVETHAQVRRILLEGKRAVGVEVLQHGV
IRTLRARREVVLAAGALQTPQLLMLSGVGPAQELARVGIQTVQHLPGVGRNLQDHPDFVF
GYRTGSLDTMGVSLLGSVRILSEILRFRRERRGMLTTNFAEGGGFLKTRPELEAPDIQLH
FVVAMVDNHARRMRLGHGFSCHVCLLRPRSTGSVTLHSNDPLTAPLIDPAFFDDPLDVED
MVAGFKITRRLMQTPALAKWATRDLFTSHVKTDDDIRAVLRQRTDTVYHPVGTCRMGQDE
MAVVDPQLRVHGLDGLRVVDASIMPTLIGGNTNAPTIMIGEKAVDLIRGVSRVTSDVRAQ
AEAAAAQSASHHQKTSHVTT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory