PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26105 (462 amino acids)

SeqID: RR42_RS26105 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00713: NA_DICARBOXYL_SYMP_1 Pattern - Cytoplasmic Membrane]
    Motif-            CytoplasmicMembrane           [matched PS00714: NA_DICARBOXYL_SYMP_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 67462316: Aerobic C4-dicarboxylate transport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26105
MPATRKPTKETPMEKDNHPKPFYRSLYFQVITAIVIGVILGHFYPQAGAAMKPLGDGFIK
LIKMIIAPIIFCTVVVGIAGMEDMKKVGKTGGLALLYFEVVSAIALVVGLVIINIAKPGV
GMNVDVSTLDTKSIAAYTGPGKMQGTVDFLLHVIPNTVVDAFAQGEILQVLLFAVMFGFA
LHKFGGRGTLVFDFIEKFSHVLFAIVGYIMKVAPIGAFGAMAFTIGKYGVGSLLQLGQLM
ATFYATCLFFIFVVLGGIARAHGFSIWKFIKYIKEELLIVLGTSSSESVLPRMMAKLENL
GARKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNTEMSLTQQLTLLAVLLLTSKGA
AGVTGSGFIVLAATLSAVGHVPVAGLALILGIDRFMSEARALTNLIGNGVATVVVAKWTG
DLDVARMHRRLDNESDAEADEPEAVLDPMVARMPASGTSMTR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory