PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS26915 (573 amino acids)

SeqID: RR42_RS26915 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS26915
MTMQGAASPTILPIGGLSHVRGSTDIPLSELTVPALLAETVARFPDREAVVFREQGIRWS
WREFAQVVDAMAGGLRLLGLERGDRIGIWSPNRVEWLVTQFATARLGLVLVNINPAYRLA
ELEYALNKVGCKAIVAAESFKTSRYLEMLQTLAPELKSCEPGTLQAARLPALRWVIRMGA
ERTPGMLNYDALLAHGTHALTSELDALTAQLDRYDPINIQFTSGTTGAPKGATLTHRNIV
NNARFIAMAMRFSEQDKLCIPVPFYHCFGMVLAVLACVSTGACMVFPGEAFEPAATMAAV
SEERCTALHGVPTMFIAQLDHPDFAKYDFSTLRTGIMAGSPCPIETMKRVISQMHMAQVT
IAYGMTETSPVSFQSSTTDPLDKRVTTVGQIQPHLEVKLVDGTGEIVPVGEKGELCTRGY
SVMQGYWDDEPRTREAIRDGWMHTGDLATIDAEGYCNIVGRVKDMLIRGGENVYPREIEE
FLFRHPKVQAVQVFGVPDPKYGEEVCAWIVLKPGDTATEDDIRAFCRDQIAHYKIPRYIR
FVDEMPMTITGKVQKFVMRERMTLELGLGDKTT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory