PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS27115 (242 amino acids)

SeqID: RR42_RS27115 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS27115
MSLIAIENVKKRFGANEVLKGIDLKVEAGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI
TVAGAKLGSSELELRALRRKVGMIFQQFNLFPHLSAGRNVMLAPTVAAGVKEPEALTRAR
ECLAKVALAEKFDSYPDQLSGGQQQRVAIARALAMQPRALLCDEITSALDPELVVEVLNV
VRQLAREGMTLLMVTHEMRFAREVCNRVVFMHQGRVHEIGPPEQLFSHPATPELQQFLGM
AA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory